NextClip is a tool for comprehensive quality analysis and read preparation for Nextera long mate pair (LMP) libraries. NextClip comprises two parts. The core component is the NextClip command line tool, an efficient C program for processing mate pair FASTQ files, generating summary statistics and preparing reads for use in scaffolding. A second component, the NextClip pipeline, is designed for cases where there is a reference of partially assembly. It utilises NextClip, along with BWA, to generate a more detailed PDF report that includes analysis of library insert sizes.
NextClip: an analysis and read preparation tool for Nextera long mate pair libraries
Richard M. Leggett; Bernardo J. Clavijo; Leah Clissold; Matthew D. Clark; Mario Caccamo
Bioinformatics 2013; doi: 10.1093/bioinformatics/btt702
Source code is available at GitHub.
A manual is available here.
Recent space activity
As you and your team create content this area will fill up and display the latest updates.