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TGAC Browser version 0.1.1 has been released!

Source code is available on GitHub https://github.com/TGAC/TGACBrowser/

Release notes:

  1. Easy to set-up and customise. Set-up notes here
  2. TGAC Browser can support large genomic feature datasets, such as CHO (Chinese Hamster Ovary) and Vietnamese Rice
  3. Supports many of the basic genome features:
    1. Genes (with exons, introns and CDS)
    2. SNPs
    3. Alignments
    4. Assembly tracks (scaffolds, contigs, clones, etc)
    5. Repeat features
    6. Wig files
    7. SAM/BAM files
  4. Genetic map displays with markers
  5. Analysis tools such as BLAST can be run and displayed inline as a track or result table

Roadmap of issues under investigation:

  1. SAM/BAM files can be slow to load and render
  2. Tracks mapped to assembly level cant be displayed
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